Details of Microbe Species (MIC)

General Information of MIC (ID: MC0800)
  MIC Name
Enterobacter aerogenes KCTC 2190
  Synonym
Enterobacter aerogenes KCTC 2190
  Lineage Kingdom: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Enterobacteriales
Family: Enterobacteriaceae
Genus: Klebsiella
  Oxygen Sensitivity
Facultative anaerobe
  Microbial Metabolism
Fermentative; Respiratory
  Gram
Negative
  Genome Size (bp)
5280350
  No. of Coding Genes
4912
  No. of Non-Coding Genes
109
  No. of Small Non-Coding Genes
109
  No. of Gene Transcripts
5021
  Description
Klebsiella aerogenes KCTC 2190 is a strain of gram-negative, oxidase negative, catalase positive, citrate positive, indole negative, rod-shaped bacterium.
  External Links Taxonomy ID 1028307
Genome Assembly ID ASM21574v1

Full List of Metabolite(s) Produced by This MIC
     Molecule Type: Amino acid (AAs)
           Metabolite Name: Phenylacetate Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [precursors]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
Histone Deacetylation HDAC EM Info . . . [1], [2]
     Molecule Type: Choline metabolites
           Metabolite Name: Choline Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [others]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation SUV39H1 EM Info Liver promoter . [1], [2]
DNA Methylation G9a EM Info Liver promoter . [1], [2]
Histone Dimethylation H3 EM Info Cortex lysine 9 . [1], [2]
Histone Dimethylation H3 EM Info Liver lysine 4 . [1], [2]
Histone Dimethylation H3 EM Info Liver lysine 9 . [1], [2]
Histone Trimethylation H3 EM Info Cortex lysine 27 . [3], [1]
Histone Trimethylation H3 EM Info Liver lysine 27 . [1], [2]


References
1 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
2 Gestational choline supply regulates methylation of histone H3, expression of histone methyltransferases G9a (Kmt1c) and Suv39h1 (Kmt1a), and DNA methylation of their genes in rat fetal liver and brain. J Biol Chem. 2009 Jan 23;284(4):1982-9. doi: 10.1074/jbc.M807651200. Epub 2008 Nov 10.
3 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.

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