General Information of Metabolite (ID: MT111)
  Meta Name
Choline
  Unify Name
Choline
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
Bilineurine;CHOLINE ion;N,N,N-Trimethylethanol-ammonium;N-Trimethylethanolamine;Trimethylethanolamine;Choline cation;(2-Hydroxyethyl)trimethyl ammonium;(2-Hydroxyethyl)trimethylammonium;(beta-Hydroxyethyl)trimethylammonium;2-Hydroxy-N,N,N-trimethyl-ethanaminium;2-Hydroxy-N,N,N-trimethylethanaminium;Biocolina;Biocoline;Cholinum;Hepacholine;Hormocline;Lipotril;N,N,N-Trimethylethanolammonium;Neocolina;Paresan;Choline O-sulfate;Citrate, choline;Fagine;Hydroxide, choline;Vidine;Bursine;Chloride, choline;Choline chloride;Choline citrate;Bitartrate, choline;Choline bitartrate;Choline hydroxide;Choline O sulfate;O-Sulfate, choline;
  Molecule Type
Choline metabolites
  Formula
C5H14NO
  Inchi Key
OEYIOHPDSNJKLS-UHFFFAOYSA-N
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Choline is a basic constituent of lecithin that is found in many plants and animal organs. It is important as a precursor of acetylcholine, as a methyl donor in various metabolic processes, and in lipid metabolism. Choline is now considered to be an essential vitamin. While humans can synthesize small amounts (by converting phosphatidylethanolamine to phosphatidylcholine), it must be consumed in the diet to maintain health. Required levels are between 425 mg/day (female) and 550 mg/day (male). Milk, eggs, liver and peanuts are especially rich in choline. Most choline is found in phospholipids, namely phosphatidylcholine or lecithin. Choline can be oxidized to form betaine, which is a methyl source for many reactions (i.e. conversion of homocysteine e to methionine). Lack of sufficient amounts of choline in the diet can lead to a fatty liver condition and general liver damage. This arises from the lack of VLDL, which is necessary to transport fats away from the liver. Choline deficiency also leads to elevated serum levels of alanine amino transferase and is associated with increased incidence of liver cancer.
  External Links   HMDB ID   HMDB0000097
  VMH ID   CHOL
  KEGG ID   C00114
  Metlin ID   56

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation G9a EM Info Liver promoter . [1], [2]
DNA Methylation SUV39H1 EM Info Liver promoter . [1], [2]
Histone Dimethylation H3 EM Info Cortex lysine 9 . [1], [2]
Histone Dimethylation H3 EM Info Liver lysine 4 . [1], [2]
Histone Dimethylation H3 EM Info Liver lysine 9 . [1], [2]
Histone Trimethylation H3 EM Info Cortex lysine 27 . [1], [2]
Histone Trimethylation H3 EM Info Liver lysine 27 . [1], [2]

The microbes that produce this metabolite
      Aeromonas hydrophila subsp. hydrophila ATCC 7966
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Aeromonas hydrophila subsp. hydrophila ATCC 7966 is a strain of facultative anaerobic and gram-negative, saccharolytic bacteria.
      Desulfovibrio desulfuricans subsp. desulfuricans DSM 642
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Desulfovibrio desulfuricans DSM 642 is a strain of facultative anaerobic, gram-negative bacteria.
      Escherichia coli UTI89 (UPEC)
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [1]
         Description
Escherichia coli UTI89 is a strain of facultative anaerobic, gram-negative, fermentative or respiratory bacteria.
      Olsenella profusa F019501
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Olsenella profusa F0195 is a strain of obligate anaerobic, gram-positive, saccharolytic bacteria.
      Serratia fonticola RB-25
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Chania multitudinisentens RB-25 is a strain of facultative anaerobic, gram-negative, fermentative bacteria.
      Enterobacter aerogenes KCTC 2190
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Klebsiella aerogenes KCTC 2190 is a strain of gram-negative, oxidase negative, catalase positive, citrate positive, indole negative, rod-shaped bacterium.
      Kluyvera ascorbata ATCC 33433
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Kluyvera ascorbata ATCC 33433 is a strain of facultative anaerobic, gram-negative, fermentative or respiratory metabolism bacteria.

References
1 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
2 Gestational choline supply regulates methylation of histone H3, expression of histone methyltransferases G9a (Kmt1c) and Suv39h1 (Kmt1a), and DNA methylation of their genes in rat fetal liver and brain. J Biol Chem. 2009 Jan 23;284(4):1982-9. doi: 10.1074/jbc.M807651200. Epub 2008 Nov 10.
3 Acetate functions as an epigenetic metabolite to promote lipid synthesis under hypoxia. Nat Commun. 2016 Jun 30;7:11960. doi: 10.1038/ncomms11960.

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