General Information of Metabolite (ID: MT062)
  Meta Name
Hydrogen sulfide (H2S)
  Unify Name
Hydrogen sulfide
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
[SH2];Acide sulfhydrique;Dihydrogen monosulfide;Dihydrogen sulfide;H2S;Hydrogen monosulfide;Hydrogen sulphide;Hydrogen-sulfide;Hydrogene sulfure;HYDROsulfURIC ACID;Schwefelwasserstoff;Sulfide;Sulfure d'hydrogene;Acide sulphhydrique;Dihydrogen monosulphide;Dihydrogen sulphide;Hydrogen monosulphide;Hydrogen-sulphide;Hydrogene sulphure;HYDROsulfate;HYDROsulphate;HYDROsulphuric acid;Sulphide;Sulphure d'hydrogene;Dihydrogen disulfide;Hepatate;Hepatic acid;Hepatic gas;Hydrosulfurate;idrogeno Solforato;Sewer gas;Siarkowodor;Sour gas;Stink dAMP;Sulfur hydride;Sulfur hydroxide;Sulfureted hydrogen;Sulfuretted hydrogen;Zwavelwaterstof;Sulfide, hydrogen;Hydrogen sulfide (H2(SX));Hydrogen sulfide (H2S2);Hydrogen sulfide (H2S3);
  Molecule Type
Other metabolites
  Formula
HS
  Inchi Key
RWSOTUBLDIXVET-UHFFFAOYSA-M
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Hydrogen sulfide is a highly toxic and flammable gas. Because it is heavier than air it tends to accumulate at the bottom of poorly ventilated spaces. Although very pungent at first, it quickly deadens the sense of smell, so potential victims may be unaware of its presence until it is too late. H2S arises from virtually anywhere where elemental sulfur comes into contact with organic material, especially at high temperatures. Hydrogen sulfide is a covalent hydride chemically related to water (H2O) since oxygen and sulfur occur in the same periodic table group. It often results when bacteria break down organic matter in the absence of oxygen, such as in swamps, and sewers (alongside the process of anaerobic digestion). It also occurs in volcanic gases, natural gas and some well waters. It is also important to note that Hydrogen sulfide is a central participant in the sulfur cycle, the biogeochemical cycle of sulfur on Earth. As mentioned above, sulfur-reducing and sulfate-reducing bacteria derive energy from oxidizing hydrogen or organic molecules in the absence of oxygen by reducing sulfur or sulfate to hydrogen sulfide. Other bacteria liberate hydrogen sulfide from sulfur-containing amino acids. Several groups of bacteria can use hydrogen sulfide as fuel, oxidizing it to elemental sulfur or to sulfate by using oxygen or nitrate as oxidant. The purple sulfur bacteria and the green sulfur bacteria use hydrogen sulfide as electron donor in photosynthesis, thereby producing elemental sulfur. (In fact, this mode of photosynthesis is older than the mode of cyanobacteria, algae and plants which uses water as electron donor and liberates oxygen).
  External Links   HMDB ID   HMDB0003276
  VMH ID   HC00250
  KEGG ID   C00283
  Metlin ID   3193

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation AT1b EM Info Inflammatory cells Genbank:U01033 277-1454 Hypertension [1], [2]
DNA Methylation DNMT1 EM Info HUVECs . . [3], [4]
DNA Methylation DNMT3A EM Info Smooth muscle cells . . [5], [6]
DNA Demethylation Foxp3 EM Info Treg cells Promoter Adoptive transfer colitis [7], [2]
DNA Methylation TFAM EM Info Smooth muscle cells promoter: 210 bp and30 bp . [5], [6]
Histone Acetylation H3 EM Info THP-1 cells TNF-Alpha promoter Inflammation [7], [6]
Histone Acetylation H3 EM Info THP-1 cells IL-6 promoter Inflammation [5], [2]
Histone Methylation H3K27 EM Info THP-1 cells IL-6 promoter Inflammation [7], [6]
Histone Methylation H3K27 EM Info THP-1 cells TNF-Alpha promoter Inflammation [7], [6]
Histone Dimethylation H3K4 EM Info . promoter Intestinal diseases [8]
Histone Methylation H3K9 EM Info THP-1 cells IL-6 promoter Inflammation [7], [6]
Histone Methylation H3K9 EM Info THP-1 cells TNF-Alpha promoter Inflammation [7], [6]
Histone Deacetylation HDAC EM Info THP-1 cells . Inflammation [7], [6]
Histone Deacetylation SIRT1 EM Info A549 cells . Mitochondrial dysfunction [9], [4]
Histone Deacetylation SIRT3 EM Info Cardiomyocytes . Myocardial hypertrophy [9], [2]
miRNA miR-126-3p EM Info HUVECs . . [3], [4]
miRNA miR-129 EM Info Glomerular endothelial cells . Hypertension [9], [2]
miRNA miR-194 EM Info Glomerular endothelial cells . Genetic diabetic kidney [9], [2]
miRNA miR-455 EM Info BEAS-2B cells . Hypoxic injury [9], [4]

The microbes that produce this metabolite
      Desulfovibrio piger
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [4]
         Description
Desulfovibrio piger is an SRB from the Proteobacteria phylum (deltaproteobacteria) and formerly known as Desulfomonas pigra, is a gram-negative, nonmotile, rod-shaped bacteria.
      Desulfovibrio piger ATCC 29098
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [2]
         Description
Desulfovibrio piger ATCC 29098 is a strain of nanaerobic, gram-negative, only anaerobic respiration with sulfate as electron acceptor, non fermentative, asaccharolytic metabolism bacteria.
      Desulfovibrio sp. 3_1_syn3
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [2]
         Description
Desulfovibrio sp. 3_1_syn3 is a species of nanaerobic, gram-negative, only anaerobic respiration with sulfate as electron acceptor, nonfermentative, asaccharolytic metabolism bacteria.
      Desulfovirio spp.
         Detailed Information MIC Info click to show the detail information of this Microbiota [8], [5]
         Description
Desulfovibrio is a genus of gram-negative sulfate-reducing bacteria.
      Bilophila wadsworthia
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [10]
         Description
Bilophila wadsworthia is a gram-negative anaerobic rod. This bacteria carries out fermentation within the gut using taurine as the final electron acceptor. It is urease-positive, bile resistant, catalase-positive. It is largely found in patients that have appendicitis.
      Desulfovibrio
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [11]
         Description
Desulfovibrio is a genus of gram-negative sulfate-reducing bacteria.
      Curtobacterium flaccumfaciens
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [12]
         Description
Curtobacteria flaccumfaciens is a gram-positive aerobic bacteria from the genus Curtobacteria.
      Campylobacter fetus
         Detailed Information MIC Info click to show the detail information of this Microbiota [5], [13]
         Description
Campylobacter fetus is a rod-shaped, gram-negative species of bacteria within the genus Campylobacter of phylum Proteobacteria.
      Bilophila spp.
         Detailed Information MIC Info click to show the detail information of this Microbiota [8], [5]
         Description
Bilophila is a gram-negative anaerobic bacteria that belongs in the Proteobacteria phylum.

References
1 Maternal Renovascular Hypertensive Rats Treatment With Hydrogen Sulfide Increased the Methylation of AT1b Gene in Offspring. Am J Hypertens. 2017 Nov 6;30(12):1220-1227. doi: 10.1093/ajh/hpx124.
2 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
3 Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells. 2010 Apr;28(4):713-20. doi: 10.1002/stem.402.
4 Lactate-utilizing community is associated with gut microbiota dysbiosis in colicky infants Sci Rep. 2017 Sep 11;7(1):11176. doi: 10.1038/s41598-017-11509-1.
5 Hydrogen Sulfide Maintains Mitochondrial DNA Replication via Demethylation of TFAM. Antioxid Redox Signal. 2015 Sep 1;23(7):630-42. doi: 10.1089/ars.2014.6186. Epub 2015 May 14.
6 Hydrogen Sulfide and Sulfate Prebiotic Stimulates the Secretion of GLP-1 and Improves Glycemia in Male Mice Endocrinology. 2017 Oct 1;158(10):3416-3425. doi: 10.1210/en.2017-00391.
7 Hydrogen sulfide attenuates cytokine production through the modulation of chromatin remodeling. Int J Mol Med. 2015 Jun;35(6):1741-6. doi: 10.3892/ijmm.2015.2176. Epub 2015 Apr 8.
8 Dietary nutrients shape gut microbes and intestinal mucosa via epigenetic modifications. Crit Rev Food Sci Nutr. 2020 Oct 12:1-15. doi: 10.1080/10408398.2020.1828813. Online ahead of print.
9 Acetate functions as an epigenetic metabolite to promote lipid synthesis under hypoxia. Nat Commun. 2016 Jun 30;7:11960. doi: 10.1038/ncomms11960.
10 Intestinal microbiota, chronic inflammation, and colorectal cancer Intest Res. 2018 Jul;16(3):338-345. doi: 10.5217/ir.2018.16.3.338. Epub 2018 Jul 27.
11 The Role of the Gut Microbiota in Colorectal Cancer Causation Int J Mol Sci. 2019 Oct 24;20(21):5295. doi: 10.3390/ijms20215295.
12 Effects of lasalocid or monensin on lactate-producing or -using rumen bacteria J Anim Sci. 1981 Feb;52(2):418-26. doi: 10.2527/jas1981.522418x.
13 Tannerella forsythia-produced methylglyoxal causes accumulation of advanced glycation endproducts to trigger cytokine secretion in human monocytes Mol Oral Microbiol. 2018 Aug;33(4):292-299. doi: 10.1111/omi.12224. Epub 2018 May 2.

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