Details of Microbe Species (MIC)

General Information of MIC (ID: MC1011)
  MIC Name
Lactobacillus acidophilus
  Synonym
Bacillus acidophilus
  Lineage Kingdom: Bacteria
Phylum: Firmicutes
Class: Bacilli
Order: Lactobacillales
Family: Lactobacillaceae
Genus: Lactobacillus
  Oxygen Sensitivity
Facultative anaerobe
  Microbial Metabolism
Saccharolytic; Respiratory or Fermentative
  Gram
Positive
  Host Relationship
Probiotic
  Genome Size (bp)
1875071
  No. of Base Pairs
1956698
  Description
Lactobacillus acidophilus is a species of facultatively anaerobic, gram-negative bacteria. L. acidophilus is a probiotic bacteria that naturally occurs in the human gut and other parts of the body.
  External Links Taxonomy ID 1579
GutMDisorder ID gm0394
GOLD Database ID Go0037534
GIMICA ID MIC00702

Full List of Metabolite(s) Produced by This MIC
     Molecule Type: Other metabolites
           Metabolite Name: Resveratrol Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [others]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation TP53 EM Info MDA-MB-231 cells chr17:7,518,950-7,519,377 Breast Cancer [1], [2]
DNA Methylation TGFBR2 EM Info MDA-MB-231 cells chr3:30,620,962-30,621,211 Breast Cancer [1], [2]
DNA Methylation AJAP1 EM Info MDA-MB-231 cells chr1:4,612,731-4,612-888 Breast Cancer [1], [2]
DNA Methylation CAMTA1 EM Info MDA-MB-231 cells chr1:6,767,756-6,767,928 Breast Cancer [1], [2]
DNA Methylation TRIM33 EM Info MDA-MB-231 cells chr1:114,857,057-114,857,196 Breast Cancer [1], [2]
DNA Methylation MSH2 EM Info MDA-MB-231 cells chr2:47,482,647-47,482,947 Breast Cancer [1], [2]
DNA Methylation TET3 EM Info MDA-MB-231 cells chr2:74,124,963-74,125,126 Breast Cancer [1], [2]
DNA Methylation HK2 EM Info MDA-MB-231 cells chr2:74,912,526-74,912,673 Breast Cancer [1], [2]
DNA Methylation CTNNA2 EM Info MDA-MB-231 cells chr2:80,403,073-80,403,510 Breast Cancer [1], [2]
DNA Methylation ZMYND10 EM Info MDA-MB-231 cells chr3:50,354,891-50,355,018 Breast Cancer [1], [2]
DNA Methylation CACNA1D EM Info MDA-MB-231 cells chr3:53,501,943-53,502,690 Breast Cancer [1], [2]
DNA Methylation ABLIM2 EM Info MDA-MB-231 cells chr4:8,213,153-8,213,706 Breast Cancer [1], [2]
DNA Methylation FOXO3 EM Info MDA-MB-231 cells chr6:109,091,254-109,091,979 Breast Cancer [1], [2]
DNA Methylation IGF2R EM Info MDA-MB-231 cells chr6:160,432,081-160,434,242 Breast Cancer [1], [2]
DNA Methylation TRPS1 EM Info MDA-MB-231 cells chr8:116,748,864-116,749,115 Breast Cancer [1], [2]
DNA Methylation PAX5 EM Info MDA-MB-231 cells chr9:37,024,116-37024,251 Breast Cancer [1], [2]
DNA Methylation BRD3 EM Info MDA-MB-231 cells chr9:135,904,041-135,904,714 Breast Cancer [1], [2]
DNA Methylation DDB2 EM Info MDA-MB-231 cells chr11:47,190,996-47,191,347 Breast Cancer [1], [2]
DNA Methylation AHNAK EM Info MDA-MB-231 cells chr11:61,968,630-61,968,791 Breast Cancer [1], [2]
DNA Methylation MEN1 EM Info MDA-MB-231 cells chr11:64,329,003-64,329,332 Breast Cancer [1], [2]
DNA Methylation NUAK1 EM Info MDA-MB-231 cells chr12:105,058,438-105,058,799 Breast Cancer [1], [2]
DNA Methylation FOXO1 EM Info MDA-MB-231 cells chr13:40,137,800-40,137,961 Breast Cancer [1], [2]
DNA Methylation DICER1 EM Info MDA-MB-231 cells chr14:94,693,252-94,693,411 Breast Cancer [1], [2]
DNA Methylation BUB1B EM Info MDA-MB-231 cells chr15:38,238,742-38,239,015 Breast Cancer [1], [2]
DNA Methylation AXIN1 EM Info MDA-MB-231 cells chr16:287,795-288,150 Breast Cancer [1], [2]
DNA Methylation NOTCH3 EM Info MDA-MB-231 cells chr19:15,173,044-15,173,193 Breast Cancer [1], [2]
DNA Methylation RUNX1 EM Info MDA-MB-231 cells chr21:35,334,957-35,335,196 Breast Cancer [1], [2]
DNA Methylation MYH9 EM Info MDA-MB-231 cells chr22:35,048,714-35,048,851 Breast Cancer [1], [2]
DNA Methylation WIF1 EM Info MDA-MB-231 cells chr12:63,801,692-63,801,823 Breast Cancer [1], [2]
DNA Methylation GRB2 EM Info MDA-MB-231 cells chr17:70,915,297-70,915,833 Breast Cancer [1], [2]
DNA Methylation IRF4 EM Info MDA-MB-231 cells chr6:338,182-338,411 Breast Cancer [1], [2]
DNA Methylation SOX2 EM Info MDA-MB-231 cells chr3:182,913,050-182,913,777 Breast Cancer [1], [2]
DNA Methylation STAT3 EM Info MDA-MB-231 cells chr17:37,795,422-37,796,071 Breast Cancer [1], [2]
DNA Methylation TCF3 EM Info MDA-MB-231 cells chr19:1,576,326-1,576,663 Breast Cancer [1], [2]
DNA Methylation TSC2 EM Info MDA-MB-231 cells chr16:2,074,203-2,074,846 Breast Cancer [1], [2]
DNA Methylation AKT1 EM Info MDA-MB-231 cells chr14:104,311,019,-104,311,666 Breast Cancer [1], [2]
DNA Methylation CBFA2T3 EM Info MDA-MB-231 cells chr16:87,570,692-87,570,959 Breast Cancer [1], [2]
DNA Methylation CDKN1A EM Info MDA-MB-231 cells chr6:36,759,633-36,759,904 Breast Cancer [1], [2]
DNA Methylation EIF3A EM Info MDA-MB-231 cells chr10:120,832,250-120,832,613 Breast Cancer [1], [2]
DNA Methylation FGFR1 EM Info MDA-MB-231 cells chr8:38,445,848-38,446,597 Breast Cancer [1], [2]
DNA Methylation FGFR3 EM Info MDA-MB-231 cells chr4:1,773,498-1,773,647 Breast Cancer [1], [2]
DNA Methylation FLCN EM Info MDA-MB-231 cells chr17:17,065,411-17,065,938 Breast Cancer [1], [2]
DNA Methylation GNAT1 EM Info MDA-MB-231 cells chr3:50,206,159-50,206,606 Breast Cancer [1], [2]
DNA Methylation LIFR EM Info MDA-MB-231 cells chr5:38,633,313-38,633,476 Breast Cancer [1], [2]
DNA Methylation MST1 EM Info MDA-MB-231 cells chr3:49,700,364-49,701,197 Breast Cancer [1], [2]
DNA Methylation MST1R EM Info MDA-MB-231 cells chr3:49,95,339-49,915,950 Breast Cancer [1], [2]
DNA Methylation NOTCH1 EM Info MDA-MB-231 cells chr9:138,514,925-138,515,374 Breast Cancer [1], [2]
DNA Methylation NTRK1 EM Info MDA-MB-231 cells chr1:155,051,675-155,052,438 Breast Cancer [1], [2]
DNA Methylation RPL5 EM Info MDA-MB-231 cells chr1:93,075,648-93,075,810 Breast Cancer [1], [2]
DNA Methylation STK11 EM Info MDA-MB-231 cells chr19:1,177,504-1,177,639 Breast Cancer [1], [2]


References
1 Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host. Nutrients. 2020 Feb 25;12(3):597. doi: 10.3390/nu12030597.
2 Methylation Landscape of Human Breast Cancer Cells in Response to Dietary Compound Resveratrol. PLoS One. 2016 Jun 29;11(6):e0157866. doi: 10.1371/journal.pone.0157866. eCollection 2016.

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