General Information of MIC (ID: MC0739)
  MIC Name
Peptoniphilus harei ACS-146-V-Sch2b
  Lineage Kingdom: Bacteria
Phylum: Firmicutes
Class: Tissierellia
Order: Tissierellales
Family: Peptoniphilaceae
Genus: Peptoniphilus
  Oxygen Sensitivity
Obligate anaerobe
  Microbial Metabolism
Fermentative; Respiratory
  Gram
Positive
  Genome Size (bp)
1836030
  No. of Coding Genes
1724
  No. of Non-Coding Genes
42
  No. of Small Non-Coding Genes
42
  No. of Gene Transcripts
1766
  Description
Peptoniphilus harei ACS-146-V-Sch2b is a gram-positive and obligate anaerobic strain from the genus of Peptoniphilus.
  External Links Taxonomy ID 908338
Genome Assembly ID ASM18356v1
GOLD Database ID Go0006146

Full List of Metabolite(s) Produced by This MIC
     Molecule Type: Fatty acids
           Metabolite Name: Butyrate Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [end-products]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Demethylation DPPA2 EM Info iPS cells promoter . [1], [2]
DNA Demethylation POU5F1 EM Info iPS cells promoter . [1], [2]
Histone Acetylation H3K9 EM Info KGN cells GPR41 . [3], [2]
Histone Acetylation H3K9 EM Info KGN cells GPR43 . [3], [2]
Histone Acetylation H3 EM Info CD41T cells Foxo3A promoter . [4], [2]
Histone Deacetylation HDAC2 EM Info . . . [5], [2]
Histone Deacetylation HDAC1 EM Info . . . [5], [2]
miRNA miR-92a EM Info Colon cancer cells . Colon cancer [6], [2]


References
1 Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells. 2010 Apr;28(4):713-20. doi: 10.1002/stem.402.
2 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
3 Butyrate drives the acetylation of histone H3K9 to activate steroidogenesis through PPAR-gamma and PGC1-alpha pathways in ovarian granulosa cells. FASEB J. 2021 Feb;35(2):e21316. doi: 10.1096/fj.202000444R.
4 Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature. 2013 Dec 19;504(7480):446-50. doi: 10.1038/nature12721. Epub 2013 Nov 13.
5 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.
6 Crosstalk between the microbiome and epigenome: messages from bugs. J Biochem. 2018 Feb 1;163(2):105-112. doi: 10.1093/jb/mvx080.

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