Details of Microbe Species (MIC)

General Information of MIC (ID: MC0708)
  MIC Name
Dyadobacter fermentans DSM 18053
  Lineage Kingdom: Bacteria
Phylum: Bacteroidetes
Class: Cytophagia
Order: Cytophagales
Family: Cytophagaceae
Genus: Dyadobacter
  Oxygen Sensitivity
Aerobe
  Microbial Metabolism
Saccharolytic; Fermentative
  Gram
Negative
  No. of Coding Genes
5719
  No. of Non-Coding Genes
48
  No. of Small Non-Coding Genes
48
  No. of Gene Transcripts
5767
  Description
Dyadobacter fermentans DSM 18053 is a gram-negative and aerobic strain from the genus of Dyadobacter.
  External Links Taxonomy ID 471854
Genome Assembly ID ASM2312v1

Full List of Metabolite(s) Produced by This MIC
     Molecule Type: Amino acid (AAs)
           Metabolite Name: Methionine Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [precursors]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Hypermethylation DNMT3A EM Info Blood cells . . [1], [2]
Histone Trimethylation H3 EM Info Blood cells lysine 4 . [1], [2]
miRNA miR-328-3p EM Info . . . [3], [1]
           Metabolite Name: Tryptophan Click to Show/Hide
              Detailed Infomation Meta Info click to show the detail information of this Metabolite
              Metabolic Classification Microbial producted compound [precursors]
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation FMNL2 EM Info Hepatocellular CpG site: Cg01467882 non-alcoholic steatohepatitis [4], [1]
DNA Methylation ARL4C EM Info Hepatocellular CpG site: Cg15016771 non-alcoholic steatohepatitis [4], [1]
DNA Methylation MCC EM Info Hepatocellular CpG site: Cg24094897 non-alcoholic steatohepatitis [4], [1]
DNA Methylation HDAC9 EM Info Hepatocellular CpG site: Cg16925459 non-alcoholic steatohepatitis [4], [1]
DNA Methylation FAM188B EM Info Hepatocellular CpG site: Cg02543636 non-alcoholic steatohepatitis [4], [1]
DNA Methylation SEMA3E EM Info Hepatocellular CpG site: Cg14519356 non-alcoholic steatohepatitis [4], [1]
DNA Methylation CRTAC1 EM Info Hepatocellular CpG site: Cg03888360 non-alcoholic steatohepatitis [4], [1]
DNA Methylation COL4A1 EM Info Hepatocellular CpG site: Cg26090406 non-alcoholic steatohepatitis [4], [1]
DNA Methylation SLCO3A1 EM Info Hepatocellular CpG site: Cg03756778 non-alcoholic steatohepatitis [4], [1]
DNA Methylation ZNF611 EM Info Hepatocellular CpG site: Cg27182293 non-alcoholic steatohepatitis [4], [1]
DNA Methylation BMP2 EM Info Hepatocellular CpG site: Cg16831623 non-alcoholic steatohepatitis [4], [1]
DNA Methylation FGD6 EM Info Hepatocellular CpG site: Cg21182715 non-alcoholic steatohepatitis [4], [1]
DNA Methylation TRPV6 EM Info Hepatocellular CpG site: Cg0642946 non-alcoholic steatohepatitis [4], [1]
DNA Methylation SLC22A20 EM Info Hepatocellular CpG site: Cg27428304 non-alcoholic steatohepatitis [4], [1]
DNA Methylation LGALS9 EM Info Hepatocellular CpG site: Cg27625456 non-alcoholic steatohepatitis [4], [1]
DNA Methylation ITGB4 EM Info Hepatocellular CpG site: Cg16916914 non-alcoholic steatohepatitis [4], [1]
DNA Methylation GRHL3 EM Info Hepatocellular CpG site: Cg02984188 non-alcoholic steatohepatitis [4], [1]
DNA Methylation FAM100A EM Info Hepatocellular CpG site: Cg05009047 non-alcoholic steatohepatitis [4], [1]
DNA Methylation CLPTM1L EM Info Hepatocellular CpG site: Cg10641823 non-alcoholic steatohepatitis [4], [1]
DNA Methylation CLDN8 EM Info Hepatocellular CpG site: Cg06427867 non-alcoholic steatohepatitis [4], [1]
DNA Methylation C1QTNF1 EM Info Hepatocellular CpG site: Cg00193613 non-alcoholic steatohepatitis [4], [1]


References
1 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
2 Dysregulation of methionine metabolism in multiple sclerosis. Neurochem Int. 2018 Jan;112:1-4. doi: 10.1016/j.neuint.2017.10.011. Epub 2017 Oct 26.
3 Hydrogen sulfide signaling in regulation of cell behaviors. Nitric Oxide. 2020 Oct 1;103:9-19. doi: 10.1016/j.niox.2020.07.002. Epub 2020 Jul 17.
4 Serum aromatic and branched-chain amino acids associated with NASH demonstrate divergent associations with serum lipids. Liver Int. 2021 Apr;41(4):754-763. doi: 10.1111/liv.14743. Epub 2020 Dec 5.

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