General Information of Metabolite (ID: MT007)
  Meta Name
Tryptophan
  Unify Name
L-Tryptophan
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
(-)-Tryptophan;(2S)-2-amino-3-(1H-indol-3-yl)Propanoate;(2S)-2-amino-3-(1H-indol-3-yl)Propanoic acid;(L)-Tryptophan;(S)-1H-Indole-3-alanine;(S)-2-amino-3-(3-Indolyl)propionic acid;(S)-Tryptophan;(S)-a-Aminoindole-3-propionate;(S)-a-Aminoindole-3-propionic acid;(S)-a-amino-1H-Indole-3-propanoate;(S)-a-amino-1H-Indole-3-propanoic acid;(S)-a-amino-b-(3-Indolyl)-propionate;(S)-a-amino-b-(3-Indolyl)-propionic acid;(S)-a-amino-b-Indolepropionate;(S)-a-amino-b-Indolepropionic acid;(S)-alpha-Aminoindole-3-propionate;(S)-alpha-Aminoindole-3-propionic acid;(S)-alpha-Aminoindole-3-propionate;(S)-alpha-Aminoindole-3-propionic acid;(S)-alpha-amino-1H-Indole-3-propanoate;(S)-alpha-amino-1H-Indole-3-propanoic acid;(S)-alpha-amino-beta-(3-Indolyl)-propionate;(S)-alpha-amino-beta-(3-Indolyl)-propionic acid;(S)-alpha-amino-beta-Indolepropionate;(S)-alpha-amino-beta-Indolepropionic acid;(S)-Alpha-amino-1H-indole-3-propanoate;(S)-Alpha-amino-1H-indole-3-propanoic acid;(S)-Alpha-amino-beta-(3-indolyl)-propionate;(S)-Alpha-amino-beta-(3-indolyl)-propionic acid;1-beta-3-Indolylalanine;1beta-3-Indolylalanine;1H-Indole-3-alanine;2-amino-3-Indolylpropanoate;2-amino-3-Indolylpropanoic acid;3-indol-3-Ylalanine;Alpha'-amino-3-indolepropionic acid;alpha-Aminoindole-3-propionic acid;Ardeytropin;H-TRP-OH;indole-3-alanine;Kalma;L-alpha-amino-3-Indolepropionic acid;L-alpha-Aminoindole-3-propionic acid;L-Tryptofan;L-Tryptophane;Lopac-T-0254;Lyphan;Optimax;Pacitron;Sedanoct;Triptofano;Trofan;Tryptacin;Tryptan;Tryptophane;Tryptophanum;Ardeydorm;L Tryptophan;L-Tryptophan-ratiopharm;Merck brand OF tryptophan;Niddapharm brand OF tryptophan;ICN brand OF tryptophan;Levotryptophan;PMS Tryptophan;PMS-Tryptophan;Ratiopharm brand OF tryptophan;Esparma brand OF tryptophan;ratio-Tryptophan;L Tryptophan ratiopharm;Naturruhe;Tryptophan metabolism alterations;Ardeypharm brand OFtryptophan;Kalma brand OF tryptophan;Pharmascience brand OF tryptophan;Upsher-smith brand OF tryptophan;ratio Tryptophan;
  Molecule Type
Amino acid (AAs)
  Formula
C11H12N2O2
  Inchi Key
QIVBCDIJIAJPQS-VIFPVBQESA-N
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Tryptophan is an essential amino acid that is the precursor of both serotonin and melatonin. Melatonin is a hormone that is produced by the pineal gland in animals, which regulates sleep and wakefulness. Serotonin is a brain neurotransmitter, platelet clotting factor, and neurohormone found in organs throughout the body. Metabolism of tryptophan into serotonin requires nutrients such as vitamin B6, niacin, and glutathione. Niacin (also known as vitamin B3) is an important metabolite of tryptophan. It is synthesized via kynurenine and quinolinic acids, which are products of tryptophan degradation. There are a number of conditions or diseases that are characterized by tryptophan deficiencies. For instance, fructose malabsorption causes improper absorption of tryptophan in the intestine, which reduces levels of tryptophan in the blood and leads to depression. High corn or other tryptophan-deficient diets can cause pellagra, which is a niacin-tryptophan deficiency disease with symptoms of dermatitis, diarrhea, and dementia. Hartnup's disease is a disorder in which tryptophan and other amino acids are not absorbed properly. Symptoms of Hartnup's disease include skin rashes, difficulty coordinating movements (cerebellar ataxia), and psychiatric symptoms such as depression or psychosis. Tryptophan supplements may be useful for treating Hartnup's. Assessment of tryptophan deficiency is done through studying excretion of tryptophan metabolites in the urine or blood. Blood may be the most sensitive test because the amino acid tryptophan is transported in a unique way. Increased urination of tryptophan breakdown products (such as kynurenine) correlates with increased tryptophan degradation, which occurs with oral contraception, depression, mental retardation, hypertension, and anxiety states. The requirement for tryptophan and protein decreases with age. The minimum daily requirement for adults is 3 mg/kg/day or about 200 mg a day. There is 400 mg of tryptophan in a cup of wheat germ. A cup of low fat cottage cheese contains 300 mg of tryptophan and chicken and turkey contain up to 600 mg of tryptophan per pound (http://www.dcnutrition.com). Tryptophan plays a role in "feast-induced" drowsiness. Ingestion of a meal rich in carbohydrates triggers the release of insulin. Insulin, in turn, stimulates the uptake of large neutral branched-chain amino acids (BCAAs) into muscle, increasing the ratio of tryptophan to BCAA in the bloodstream. The increased tryptophan ratio reduces competition at the large neutral amino acid transporter (which transports both BCAAs and tryptophan), resulting in greater uptake of tryptophan across the blood-brain barrier into the cerebrospinal fluid (CSF). Once in the CSF, tryptophan is converted into serotonin and the resulting serotonin is further metabolized into melatonin by the pineal gland, which promotes sleep. Under certain situations, tryptophan can be a neurotoxin and a metabotoxin. A neurotoxin is a compound that causes damage to the brain and nerve tissues. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Chronically high levels of tryptophan can be found in glutaric aciduria type I (glutaric acidemia type I or GA1). GA1 is an inherited disorder in which the body is unable to completely break down the amino acids lysine, hydroxylysine, and tryptophan due to a deficiency of mitochondrial glutaryl-CoA dehydrogenase (EC 1.3.99.7, GCDH). Excessive levels of their intermediate breakdown products (e.g. glutaric acid, glutaryl-CoA, 3-hydroxyglutaric acid, glutaconic acid) can accumulate and cause damage to the brain (and also other organs), but particularly the basal ganglia. Babies with glutaric acidemia type I are often born with unusually large heads (macrocephaly). Other symptoms include spasticity (increased muscle tone/stiffness) and dystonia (involuntary muscle contractions resulting in abnormal movement or posture), but many affected individuals are asymptomatic. High levels of tryptophan have also been implicated in eosinophilia-myalgia syndrome (EMS), an incurable and sometimes fatal flu-like neurological condition linked to the ingestion of large amounts of L-tryptophan. The risk of developing EMS increases with larger doses of tryptophan and increasing age. Some research suggests that certain genetic polymorphisms may be related to the development of EMS. The presence of eosinophilia is a core feature of EMS, along with unusually severe myalgia (muscle pain). It is thought that both tryptophan and certain unidentified tryptophan contaminants may contribute to EMS (PMID: 1763543 ). It has also been suggested that excessive tryptophan or elevation of its metabolites could play a role in amplifying some of the pathological features of EMS (PMID: 10721094 ). This pathological damage is further augmented by metabolites of the kynurenine pathway (a tryptophan degradation pathway).
  External Links   HMDB ID   HMDB0000929
  VMH ID   L-Tryptophan
  KEGG ID   C00078
  Metlin ID   5879

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation ARL4C EM Info Hepatocellular CpG site: Cg15016771 non-alcoholic steatohepatitis [1], [2]
DNA Methylation BMP2 EM Info Hepatocellular CpG site: Cg16831623 non-alcoholic steatohepatitis [1], [2]
DNA Methylation C1QTNF1 EM Info Hepatocellular CpG site: Cg00193613 non-alcoholic steatohepatitis [3], [2]
DNA Methylation CLDN8 EM Info Hepatocellular CpG site: Cg06427867 non-alcoholic steatohepatitis [3], [2]
DNA Methylation CLPTM1L EM Info Hepatocellular CpG site: Cg10641823 non-alcoholic steatohepatitis [3], [2]
DNA Methylation COL4A1 EM Info Hepatocellular CpG site: Cg26090406 non-alcoholic steatohepatitis [3], [2]
DNA Methylation CRTAC1 EM Info Hepatocellular CpG site: Cg03888360 non-alcoholic steatohepatitis [3], [2]
DNA Methylation FAM100A EM Info Hepatocellular CpG site: Cg05009047 non-alcoholic steatohepatitis [3], [2]
DNA Methylation FAM188B EM Info Hepatocellular CpG site: Cg02543636 non-alcoholic steatohepatitis [3], [2]
DNA Methylation FGD6 EM Info Hepatocellular CpG site: Cg21182715 non-alcoholic steatohepatitis [3], [2]
DNA Methylation FMNL2 EM Info Hepatocellular CpG site: Cg01467882 non-alcoholic steatohepatitis [3], [2]
DNA Methylation GRHL3 EM Info Hepatocellular CpG site: Cg02984188 non-alcoholic steatohepatitis [4], [2]
DNA Methylation HDAC9 EM Info Hepatocellular CpG site: Cg16925459 non-alcoholic steatohepatitis [4], [2]
DNA Methylation ITGB4 EM Info Hepatocellular CpG site: Cg16916914 non-alcoholic steatohepatitis [3], [2]
DNA Methylation LGALS9 EM Info Hepatocellular CpG site: Cg27625456 non-alcoholic steatohepatitis [3], [2]
DNA Methylation MCC EM Info Hepatocellular CpG site: Cg24094897 non-alcoholic steatohepatitis [4], [2]
DNA Methylation SEMA3E EM Info Hepatocellular CpG site: Cg14519356 non-alcoholic steatohepatitis [4], [2]
DNA Methylation SLC22A20 EM Info Hepatocellular CpG site: Cg27428304 non-alcoholic steatohepatitis [4], [2]
DNA Methylation SLCO3A1 EM Info Hepatocellular CpG site: Cg03756778 non-alcoholic steatohepatitis [3], [2]
DNA Methylation TRPV6 EM Info Hepatocellular CpG site: Cg0642946 non-alcoholic steatohepatitis [3], [2]
DNA Methylation ZNF611 EM Info Hepatocellular CpG site: Cg27182293 non-alcoholic steatohepatitis [5], [2]

The microbes that produce this metabolite
      Alcaligenes faecalis subsp. faecalis NBRC 13111
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Alcaligenes faecalis subsp. faecalis NBRC 13111 is a strain of aerobic and gram-negative bacteria.
      Alcaligenes faecalis subsp. faecalis NCIB 8687
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Alcaligenes faecalis subsp. faecalis NCIB 8687 is a strain of aerobic and gram-negative bacteria.
      Clostridium asparagiforme DSM 15981
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium asparagiforme DSM 15981 is a strain of obligate anaerobic, gram-positive, fermentative bacteria.
      Clostridium botulinum A str. ATCC 19397
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium botulinum A str. ATCC 19397 is a strain of anaerobic, gram-positive, proteolytic bacteria.
      Clostridium botulinum A str. ATCC 3502
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium botulinum A str. ATCC 3502 is a strain of anaerobic, gram-positive, proteolytic bacteria.
      Clostridium botulinum A str. Hall
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium botulinum A str. Hall is a strain of anaerobic, gram-positive, proteolytic bacteria.
      Clostridium sticklandii DSM 519
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium sticklandii DSM 519 is a strain of obligate anaerobic, gram-positive, proteolytic bacteria.
      Delftia acidovorans SPH-1
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Delftia acidovorans SPH-1 is a strain of facultative anaerobic, gram-negative bacteria.
      Porphyromonas gingivalis W83
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Porphyromonas gingivalis W83 is a strain of obligate anaerobic, gram-negative, asaccharolytic, proteolytic bacteria.
      Pseudomonas fluorescens PfO-1
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [2]
         Description
Pseudomonas fluorescens PfO-1 is a strain of aerobic, gram-negative bacteria.
      Serratia marcescens Db11
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Serratia marcescens Db11 is a strain of facultative anaerobic, gram-negative, fermentative, respiratory metabolism bacteria.
      Aneurinibacillus aneurinilyticus ATCC 12856
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Aneurinibacillus aneurinilyticus ATCC 12856 is a gram-positive and aerobic strain from the genus of Aneurinibacillus.
      Bacillus fordii DSM 16014
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Bacillus fordii DSM 16014 is a gram-positive and aerobic strain from the genus of Bacillus.
      Burkholderia cepacia GG4
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Burkholderia cepacia GG4 is a gram-negative and mcroaerophile strain from the genus of Burkholderia.
      Dyadobacter fermentans DSM 18053
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Dyadobacter fermentans DSM 18053 is a gram-negative and aerobic strain from the genus of Dyadobacter.
      Proteus penneri ATCC 35198
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Proteus penneri ATCC 35198 is a strain of facultative anaerobic, gram-negative, fermentative bacteria.
      Providencia alcalifaciens DSM 30120
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Providencia alcalifaciens DSM 30120 is a strain of facultative anaerobic, gram-negative bacteria.
      Providencia rettgeri DSM 1131
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Providencia rettgeri DSM 1131 is a strain of facultative anaerobic, gram-negative bacteria.
      Providencia rustigianii DSM 4541
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Providencia rustigianii DSM 4541 is a strain of facultative anaerobic, gram-negative bacteria.
      Providencia stuartii ATCC 25827
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Providencia stuartii ATCC 25827 is a strain of gram-negative, anaerobic bacteria from the genus Providencia.

References
1 Serum aromatic and branched-chain amino acids associated with NASH demonstrate divergent associations with serum lipids. Liver Int. 2021 Apr;41(4):754-763. doi: 10.1111/liv.14743. Epub 2020 Dec 5.
2 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
3 Acetate functions as an epigenetic metabolite to promote lipid synthesis under hypoxia. Nat Commun. 2016 Jun 30;7:11960. doi: 10.1038/ncomms11960.
4 Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells. 2010 Apr;28(4):713-20. doi: 10.1002/stem.402.
5 Potential Associations Among Alteration of Salivary miRNAs, Saliva Microbiome Structure, and Cognitive Impairments in Autistic Children. Int J Mol Sci. 2020 Aug 27;21(17):6203. doi: 10.3390/ijms21176203.

If You Find Any Error in Data or Bug in Web Service, Please Kindly Report It to Dr. Tang and Dr. Zhang.