General Information of Metabolite (ID: MT095)
  Meta Name
a-Ketoglutarate(a-Kg)
  Unify Name
Oxoglutaric acid
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
2-Ketoglutaric acid;alpha-Ketoglutaric acid;2-Ketoglutarate;Oxoglutarate;a-Ketoglutarate;a-Ketoglutaric acid;alpha-Ketoglutarate;Alpha-ketoglutarate;Alpha-ketoglutaric acid;2-oxo-1,5-Pentanedioate;2-oxo-1,5-Pentanedioic acid;2-Oxoglutarate;2-Oxoglutaric acid;2-Oxopentanedioate;2-Oxopentanedioic acid;alpha-Ketoglutaric acid, calcium salt (2:1);alpha-Ketoglutaric acid, sodium salt;Calcium alpha-ketoglutarate;alpha-Ketoglutaric acid, disodium salt;alpha-Ketoglutaric acid, monosodium salt;Calcium ketoglutarate;alpha-Ketoglutaric acid, diammonium salt;alpha-Ketoglutaric acid, dipotassium salt;alpha-Ketoglutaric acid, monopotassium salt;alpha-Ketoglutaric acid, potassium salt;alpha-Oxoglutarate
  Molecule Type
Other metabolites
  Formula
C5H4O5
  Inchi Key
KPGXRSRHYNQIFN-UHFFFAOYSA-L
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Oxoglutaric acid, also known as alpha-ketoglutarate, alpha-ketoglutaric acid, AKG or 2-Oxoglutaric acid, is classified as a gamma-keto acid or a Gamma-keto acid derivative. Gamma-keto acids are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom. Alpha-ketoglutarate is considered to be soluble (in water) and acidic. Alpha-ketoglutarate (AKG) is a key molecule in the Krebs, TCA or citric acid cycle, playing a fundamental role in determining the overall rate of this important metabolic process (PMID: 26759695). In the TCA cycle, AKG is decarboxylated to succinyl-CoA and carbon dioxide by AKG dehydrogenase, which functions as a key control point of the TCA cycle. Additionally, AKG can be generated from isocitrate by oxidative decarboxylation catalyzed by the enzyme known as isocitrate dehydrogenase (IDH). In addition to these routes of production, AKG can be produced from glutamate by oxidative deamination via glutamate dehydrogenase, and as a product of pyridoxal phosphate-dependent transamination reactions (mediated by branched-chain amino acid transaminases) in which glutamate is a common amino donor. AKG is a nitrogen scavenger and a source of glutamate and glutamine that stimulates protein synthesis and inhibits protein degradation in muscles. In particular, AKG can decrease protein catabolism and increase protein synthesis to enhance bone tissue formation in skeletal muscles (PMID: 26759695). Interestingly, enteric feeding of AKG supplements can significantly increase circulating plasma levels of such hormones as insulin, growth hormone and insulin like growth factor-1 (PMID: 26759695). It has recently been shown that AKG can extend the lifespan of adult C. elegans by inhibiting ATP synthase and TOR (PMID: 24828042). In combination with molecular oxygen, alpha-ketoglutarate is required for the hydroxylation of proline to hydroxyproline in the production of Type 1 collagen. A recent study has shown that Alpha-ketoglutarate promotes TH1 differentiation along with the depletion of glutamine thereby favoring Treg (regulatory T-cell) differentiation (PMID: 26420908). Alpha-ketoglutarate has been found to be associated with fumarase deficiency, 2-Ketoglutarate dehydrogenase complex deficiency and D-2-hydroxyglutaric aciduria which is an inborn error of metabolism (PMID: 8338207).
  External Links   HMDB ID   HMDB0000208
  VMH ID   akg
  KEGG ID   C00026
  Metlin ID   5218

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
Histone Trimethylation H3K27 EM Info Mesenchymal stromal stem cells Bmp2 promoter Age-related osteoporosis [1], [2]
Histone Trimethylation H3K27 EM Info Mesenchymal stromal stem cells Nanog promoter Age-related osteoporosis [1], [2]
Histone Trimethylation H3K27 EM Info Mesenchymal stromal stem cells Bmp4 promoter Age-related osteoporosis [3], [2]
Histone Trimethylation H3K9 EM Info Stromal stem cells Bmp2 promoter Age-related osteoporosis [2], [4]
Histone Trimethylation H3K9 EM Info Mesenchymal stromal stem cells Nanog promoter Age-related osteoporosis [1], [2]
Histone Trimethylation H3K9 EM Info Mesenchymal stromal stem cells Bmp2 promoter Age-related osteoporosis [5], [2]

The microbes that produce this metabolite
      Anaerobaculum hydrogeniformans OS1, ATCC BAA-1850
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Anaerobaculum hydrogeniformans OS1, ATCC BAA-1850 is a species of obligate anaerobic and gram-negative, saccharolytic bacteria.
      Comamonas testosteroni CNB-2
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Comamonas testosteroni CNB-2 is a strain of facultative anaerobic, gram-negative bacteria.
      Methylobacterium mesophilicum SR1.6/6
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Methylobacteria mesophilicum SR1. 6/6 is a strain of aerobic, gram-negative, respiratory metabolism bacteria.
      Methylobacterium populi BJ001
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Methylobacteria populi BJ001 is a strain of aerobic, gram-negative bacteria.
      Methylobacterium radiotolerans JCM 2831
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Methylobacteria radiotolerans JCM 2831 is a strain of aerobic, gram-negative bacteria.
      Pseudomonas fluorescens PfO-1
         Detailed Information MIC Info click to show the detail information of this Microbiota [6], [2]
         Description
Pseudomonas fluorescens PfO-1 is a strain of aerobic, gram-negative bacteria.
      Pseudomonas putida F1
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Pseudomonas putida F1 is a strain of aerobic, gram-negative bacteria.
      Pseudomonas stutzeri DSM 4166
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Pseudomonas stutzeri DSM 4166 is a strain of aerobic, gram-negative bacteria.
      Rhodococcus erythropolis PR4
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Rhodococcus erythropolis PR4 is a strain of aerobic, gram-positive, saccharolytic bacteria.
      Salmonella enterica enterica sv Typhimurium LT2
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Salmonella enterica enterica sv Typhimurium LT2 is a strain of facultative anaerobic, gram-negative, fermentative or respiratory metabolism bacteria.
      Stenotrophomonas maltophilia D457
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Stenotrophomonas maltophilia D457 is a strain of obligate anaerobic, gram-negative, asaccharolytic metabolism bacteria.
      Stenotrophomonas rhizophila PCA13
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Stenotrophomonas rhizophila PCA13 is a strain of obligate anaerobic, gram-negative, asaccharolytic metabolism bacteria.
      Vibrio fluvialis 560
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Vibrio fluvialis 560 is a strain of aerobic, gram-negative, respiratory metabolism bacteria.
      Vibrio fluvialis I21563
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Vibrio fluvialis I21563 is a strain of aerobic, gram-negative, respiratory metabolism bacteria.
      Vibrio fluvialis PG41
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Vibrio fluvialis PG41 is a strain of aerobic, gram-negative, respiratory metabolism bacteria.
      Vibrio furnissii NCTC 11218
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Vibrio furnissii NCTC 11218 is a strain of facultative anaerobic, gram-positive, saccharolytic bacteria.
      Vibrio parahaemolyticus RIMD 2210633
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Vibrio parahaemolyticus RIMD 2210633 is a strain of facultative anaerobic, gram-negative bacteria.
      Aneurinibacillus aneurinilyticus ATCC 12856
         Detailed Information MIC Info click to show the detail information of this Microbiota [6], [2]
         Description
Aneurinibacillus aneurinilyticus ATCC 12856 is a gram-positive and aerobic strain from the genus of Aneurinibacillus.
      Bacillus fordii DSM 16014
         Detailed Information MIC Info click to show the detail information of this Microbiota [6], [2]
         Description
Bacillus fordii DSM 16014 is a gram-positive and aerobic strain from the genus of Bacillus.
      Brevibacillus agri 5-2
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Brevibacillus agri 5-2 is a gram-variable and aerobic strain from the genus of Brevibacillus.
      Brevibacillus agri BAB-2500
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Brevibacillus agri BAB-2500 is a gram-Variable and aerobic strain from the genus of Brevibacillus.
      Brevibacillus borstelensis AK1
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Brevibacillus borstelensis AK1 is a gram-variable and aerobic strain from the genus of Brevibacillus.
      Brevibacillus brevis NBRC 100599
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Brevibacillus brevis NBRC 100599 is a gram-variable and aerobic strain from the genus of Brevibacillus.
      Burkholderia cepacia GG4
         Detailed Information MIC Info click to show the detail information of this Microbiota [7], [2]
         Description
Burkholderia cepacia GG4 is a gram-negative and mcroaerophile strain from the genus of Burkholderia.
      Enterobacter cloacae EcWSU1
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Enterobacter cloacae EcWSU1 is a gram-negative and facultative anaerobic strain from the genus of Enterobacter.
      Ochrobactrum anthropi ATCC 49188
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Ochrobactrum anthropi ATCC 49188 is a gram-negative and facultative anaerobic strain from the genus of Ochrobactrum.
      Ochrobactrum intermedium LMG 3301
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Ochrobactrum intermedium LMG 3301 is a gram-negative and microaerophilic strain from the genus of Ochrobactrum.
      Pseudomonas nitroreducens HBP1
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [8]
         Description
Pseudomonas nitroreducens HBP1 is a gram-negative and aerobic strain from the genus of Pseudomonas.
      Rhodococcus equi NBRC 101255 = C 701
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Rhodococcus equi NBRC 101255 = C 701 is a gram-positive and aerobic strain from the genus of Rhodococcus.
      Rhodococcus equi ATCC 33707
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Rhodococcus equi ATCC 33707 is a gram-positive and aerobic strain from the genus of Rhodococcus.
      Rhodococcus rhodochrous ATCC 21198
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [4]
         Description
Rhodococcus rhodochrous ATCC 21198 is a gram-positive and aerobic strain from the genus of Rhodococcus.

References
1 Acetate functions as an epigenetic metabolite to promote lipid synthesis under hypoxia. Nat Commun. 2016 Jun 30;7:11960. doi: 10.1038/ncomms11960.
2 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992.
3 Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells. 2010 Apr;28(4):713-20. doi: 10.1002/stem.402.
4 Alpha-ketoglutarate ameliorates age-related osteoporosis via regulating histone methylations. Nat Commun. 2020 Nov 5;11(1):5596. doi: 10.1038/s41467-020-19360-1.
5 Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature. 2013 Dec 19;504(7480):446-50. doi: 10.1038/nature12721. Epub 2013 Nov 13.
6 Serum aromatic and branched-chain amino acids associated with NASH demonstrate divergent associations with serum lipids. Liver Int. 2021 Apr;41(4):754-763. doi: 10.1111/liv.14743. Epub 2020 Dec 5.
7 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.
8 Propionate hampers differentiation and modifies histone propionylation and acetylation in skeletal muscle cells. Mech Ageing Dev. 2021 Jun;196:111495. doi: 10.1016/j.mad.2021.111495. Epub 2021 Apr 28.

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