General Information of Metabolite (ID: MT075)
  Meta Name
Deoxycholic acid
  Unify Name
Deoxycholic acid
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
(3ALPHA,5ALPHA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID;(3alpha,5beta,12alpha)-3,12-Dihydroxycholan-24-Oic acid;3alpha,12alpha-Dihydroxy-5beta-cholanic acid;7alpha-Deoxycholic acid;Desoxycholic acid;Desoxycholsaeure;Deoxycholate;3alpha,12alpha-Dihydroxy-5beta-cholanate;(3a,5a,12a)-3,12-DIHYDROXYCHOLAN-24-Oate;(3a,5a,12a)-3,12-DIHYDROXYCHOLAN-24-Oic acid;(3alpha,5alpha,12alpha)-3,12-DIHYDROXYCHOLAN-24-Oate;(3Alpha,5Alpha,12Alpha)-3,12-dihydroxycholan-24-Oate;(3Alpha,5Alpha,12Alpha)-3,12-dihydroxycholan-24-Oic acid;(3a,5b,12a)-3,12-Dihydroxycholan-24-Oate;(3a,5b,12a)-3,12-Dihydroxycholan-24-Oic acid;(3alpha,5beta,12alpha)-3,12-Dihydroxycholan-24-Oate;(3Alpha,5beta,12Alpha)-3,12-dihydroxycholan-24-Oate;(3Alpha,5beta,12Alpha)-3,12-dihydroxycholan-24-Oic acid;3a,12a-Dihydroxy-5b-cholanate;3a,12a-Dihydroxy-5b-cholanic acid;3Alpha,12Alpha-dihydroxy-5beta-cholanate;3Alpha,12Alpha-dihydroxy-5beta-cholanic acid;7a-Deoxycholate;7a-Deoxycholic acid;7alpha-Deoxycholate;7Alpha-deoxycholate;7Alpha-deoxycholic acid;Desoxycholate;5b-Cholanic acid-3a,12a-diol;5b-Deoxycholate;5b-Deoxycholic acid;7-Deoxycholate;7-Deoxycholic acid;Cholerebic;Cholorebic;Degalol;Deoxy-cholate;Deoxy-cholic acid;Deoxycholatate;Deoxycholatic acid;Acid, lagodeoxycholic;Deoxycholic acid, 5alpha isomer;Deoxycholic acid, sodium salt, 12beta-isomer;Lagodeoxycholic acid;Acid, choleic;Deoxycholic acid, 12beta isomer;Deoxycholic acid, 3beta-isomer;Deoxycholic acid, monoammonium salt;12beta-Isomer deoxycholic acid;3beta-Isomer deoxycholic acid;Acid, 5alpha-isomer deoxycholic;Acid, deoxycholic;Acid, desoxycholic;Deoxycholate, sodium;Deoxycholic acid, 12beta-isomer;Deoxycholic acid, 5alpha-isomer;Deoxycholic acid, monopotassium salt;Deoxycholic acid, monosodium salt;5alpha-Isomer deoxycholic acid;Acid, dihydroxycholanoic;Choleic acid;Deoxycholic acid, 3beta isomer;Deoxycholic acid, disodium salt;Deoxycholic acid, magnesium (2:1) salt;Dihydroxycholanoic acid;Sodium deoxycholate
  Molecule Type
Bile acids (BAs)
  Formula
C24H39O4
  Inchi Key
KXGVEGMKQFWNSR-LLQZFEROSA-M
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Deoxycholic acid is a secondary bile acid produced in the liver and is usually conjugated with glycine or taurine. It facilitates fat absorption and cholesterol excretion. Bile acids are steroid acids found predominantly in the bile of mammals. The distinction between different bile acids is minute, and depends only on the presence or absence of hydroxyl groups on positions 3, 7, and 12. Bile acids are physiological detergents that facilitate excretion, absorption, and transport of fats and sterols in the intestine and liver. Bile acids are also steroidal amphipathic molecules derived from the catabolism of cholesterol. They modulate bile flow and lipid secretion, are essential for the absorption of dietary fats and vitamins, and have been implicated in the regulation of all the key enzymes involved in cholesterol homeostasis. Bile acids recirculate through the liver, bile ducts, small intestine, and portal vein to form an enterohepatic circuit. They exist as anions at physiological pH, and consequently require a carrier for transport across the membranes of the enterohepatic tissues. The unique detergent properties of bile acids are essential for the digestion and intestinal absorption of hydrophobic nutrients. Bile acids have potent toxic properties (e.g. membrane disruption) and there are a plethora of mechanisms to limit their accumulation in blood and tissues (PMID: 11316487, 16037564, 12576301, 11907135). When present in sufficiently high levels, deoxycholic acid can act as a hepatotoxin, a metabotoxin, and an oncometabolite. A hepatotoxin causes damage to the liver or liver cells. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. An oncometabolite is a compound, when present at chronically high levels, that promotes tumour growth and survival. Among the primary bile acids, cholic acid is considered to be the least hepatotoxic while deoxycholic acid is the most hepatoxic (PMID: 1641875). The liver toxicity of bile acids appears to be due to their ability to peroxidate lipids and to lyse liver cells. High bile acid levels lead to the generation of reactive oxygen species and reactive nitrogen species, disruption of the cell membrane and mitochondria, induction of DNA damage, mutation and apoptosis, and the development of reduced apoptosis capability upon chronic exposure (PMID: 24884764). Chronically high levels of deoxycholic acid are associated with familial hypercholanemia. In hypercholanemia, bile acids, including deoxycholic acid, are elevated in the blood. This disease causes liver damage, extensive itching, poor fat absorption, and can lead to rickets due to lack of calcium in bones. The deficiency of normal bile acids in the intestines results in a deficiency of vitamin K, which also adversely affects clotting of the blood. The bile acid ursodiol (ursodeoxycholic acid) can improve symptoms associated with familial hypercholanemia. Chronically high levels of deoxycholic acid are also associated with several forms of cancer including colon cancer, pancreatic cancer, esophageal cancer, and many other GI cancers.
  External Links   HMDB ID   HMDB0000626
  VMH ID   dchac
  KEGG ID   C04483
  Metlin ID   265

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
DNA Methylation FXR EM Info HCT-116 cells promoter Colon cancer [1], [2]
DNA Methylation FXR/NR1H4 EM Info White blood peripheral cells promoter Intrahepatic cholestasis of pregnancy [3], [1]
Histone Deacetylation HDAC EM Info . . . [4], [5]

The microbes that produce this metabolite
      Bacteroides
         Detailed Information MIC Info click to show the detail information of this Microbiota [6], [7]
         Description
Bacteroides is a genus of gram-negative, obligate anaerobic bacteria.
      Eubacterium
         Detailed Information MIC Info click to show the detail information of this Microbiota [4], [8]
         Description
Eubacteria is a genus of gram-positive bacteria in the family Eubacteriaceae. These bacteria are characterised by a rigid cell wall. They may either be motile or nonmotile. If motile, they have a flagellum. A typical flagellum consists of a basal body, filament, and hook. The long filament is the organ which helps eubacteria move.
      Clostridium
         Detailed Information MIC Info click to show the detail information of this Microbiota [4], [5]
         Description
Clostridium is a genus of gram-positive, anaerobic bacteria from the family Bacillaceae.
      Bifidobacterium
         Detailed Information MIC Info click to show the detail information of this Microbiota [4], [5]
         Description
Bifidobacteria is a genus of gram-positive, nonmotile, often branched anaerobic bacteria. They are ubiquitous inhabitants of the gastrointestinal tract, vagina and mouth of mammals, including humans.
      Enterobacter
         Detailed Information MIC Info click to show the detail information of this Microbiota [4], [5]
         Description
Enterobacter is a genus of common gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae. It is the type genus of the order Enterobacterales.
      Escherichia
         Detailed Information MIC Info click to show the detail information of this Microbiota [4]
         Description
Escherichia is a genus of gram-negative, non-spore-forming, facultatively anaerobic, rod-shaped bacteria from the family Enterobacteriaceae.
      Clostridium scindens
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [1]
         Description
Clostridium scindens is a species of bacteria in the genus Clostridium. Samples of this species were first isolated from human feces. Clostridia are anaerobic, motile bacteria, ubiquitous in nature, and especially prevalent in soil.
      Lactobacillus
         Detailed Information MIC Info click to show the detail information of this Microbiota [9], [4]
         Description
Lactobacillus is a genus of gram-positive, facultative anaerobic or microaerophilic, rod-shaped, non-spore-forming bacteria. They are a major part of the lactic acid bacteria group. In humans, they constitute a significant component of the microbiota at a number of body sites, such as the digestive system, urinary system, and genital system.

References
1 A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer Am J Clin Nutr. 2020 Feb 1;111(2):406-419. doi: 10.1093/ajcn/nqz301.
2 Inactivation of Adenomatous Polyposis Coli Reduces Bile Acid/Farnesoid X Receptor Expression through Fxr gene CpG Methylation in Mouse Colon Tumors and Human Colon Cancer Cells. J Nutr. 2016 Feb;146(2):236-42. doi: 10.3945/jn.115.216580. Epub 2015 Nov 25.
3 Promoter DNA methylation of farnesoid X receptor and pregnane X receptor modulates the intrahepatic cholestasis of pregnancy phenotype. PLoS One. 2014 Jan 31;9(1):e87697. doi: 10.1371/journal.pone.0087697. eCollection 2014.
4 Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host. Nutrients. 2020 Feb 25;12(3):597. doi: 10.3390/nu12030597.
5 Arachidonic and oleic acid exert distinct effects on the DNA methylome. Epigenetics. 2016 May 3;11(5):321-34. doi: 10.1080/15592294.2016.1161873. Epub 2016 Apr 18.
6 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.
7 Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling mSystems. 2017 Nov 14;2(6):e00046-17. doi: 10.1128/mSystems.00046-17. eCollection 2017 Nov-Dec.
8 Identification of lysine isobutyrylation as a new histone modification mark. Nucleic Acids Res. 2021 Jan 11;49(1):177-189. doi: 10.1093/nar/gkaa1176.
9 Valerian and valeric acid inhibit growth of breast cancer cells possibly by mediating epigenetic modifications. Sci Rep. 2021 Jan 28;11(1):2519. doi: 10.1038/s41598-021-81620-x.

If You Find Any Error in Data or Bug in Web Service, Please Kindly Report It to Dr. Tang and Dr. Zhang.