General Information of Metabolite (ID: MT027)
  Meta Name
Putrescine
  Unify Name
Putrescine
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
1,4-Butanediamine;1,4-Butylenediamine;1,4-DIAMINOBUTANE;1,4-Tetramethylenediamine;Butane-1,4-diamine;Butylenediamine;H2N(CH2)4nh2;Putrescin;Putrescina;Putreszin;Tetramethylendiamin;Tetramethylenediamine;1,4-Butanediammonium;Tetramethyldiamine;1,4 Diaminobutane;1,4 Butanediamine
  Molecule Type
Polyamines
  Formula
C4H14N2
  Inchi Key
KIDHWZJUCRJVML-UHFFFAOYSA-P
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Putrescine is a polyamine. Putrescine is related to cadaverine (another polyamine). Both are produced by the breakdown of amino acids in living and dead organisms and both are toxic in large doses. Putrescine and cadaverine are largely responsible for the foul odor of putrefying flesh, but also contribute to the odor of such processes as bad breath and bacterial vaginosis. Putrescine is also found in semen. Putrescine attacks s-adenosyl methionine and converts it to spermidine. Spermidine in turn attacks another s-adenosyl methionine and converts it to spermine. Putrescine is synthesized in small quantities by healthy living cells by the action of ornithine decarboxylase. The polyamines, of which putrescine is one of the simplest, appear to be growth factors necessary for cell division. Putrescine apparently has specific role in skin physiology and neuroprotection. (PMID: 15009201, 16364196). Pharmacological interventions have demonstrated convincingly that a steady supply of polyamines is a prerequisite for cell proliferation to occur. Genetic engineering of polyamine metabolism in transgenic rodents has shown that polyamines play a role in spermatogenesis, skin physiology, promotion of tumorigenesis and organ hypertrophy as well as neuronal protection. Transgenic activation of polyamine catabolism not only profoundly disturbs polyamine homeostasis in most tissues, but also creates a complex phenotype affecting skin, female fertility, fat depots, pancreatic integrity and regenerative growth. Transgenic expression of ornithine decarboxylase antizyme has suggested that this unique protein may act as a general tumor suppressor. Homozygous deficiency of the key biosynthetic enzymes of the polyamines, ornithine and S-adenosylmethionine decarboxylase is not compatible with murine embryogenesis.
  External Links   HMDB ID   HMDB0001414
  VMH ID   ptrc
  KEGG ID   C00134
  Metlin ID   3226

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
Histone Demethylation LSD1 EM Info . . . [1], [2]

The microbes that produce this metabolite
      Clostridium
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Clostridium is a genus of gram-positive, anaerobic bacteria from the family Bacillaceae.
      Lachnospira
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [4]
         Description
The Lachnospira is a genus of anaerobic, spore-forming bacteria in the order Clostridiales that ferments diverse plant polysaccharides to short-chain fatty acids and alcohols.
      Intestinibacter
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [4]
         Description
Intestinibacter is a genus of anaerobic, gram-positive, rod-shaped, non-motile, spore-forming bacteria in the order Eubacteriales that was isolated from human faecal material.
      Lactobacillus zeae
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [5]
         Description
Lactobacillus zeae is a facultative anaerobic, gram-negative bacteria.

References
1 Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host. Nutrients. 2020 Feb 25;12(3):597. doi: 10.3390/nu12030597.
2 Arachidonic and oleic acid exert distinct effects on the DNA methylome. Epigenetics. 2016 May 3;11(5):321-34. doi: 10.1080/15592294.2016.1161873. Epub 2016 Apr 18.
3 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.
4 Identification of Gut Microbiota and Metabolites Signature in Patients With Irritable Bowel Syndrome Front Cell Infect Microbiol. 2019 Oct 18;9:346. doi: 10.3389/fcimb.2019.00346. eCollection 2019.
5 Occurrence of lactic acid bacteria and biogenic amines in biologically aged wines Food Microbiol. 2008 Oct;25(7):875-81. doi: 10.1016/j.fm.2008.05.004. Epub 2008 May 23.

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