General Information of Metabolite (ID: MT082)
  Meta Name
Cholate
  Unify Name
Cholic acid
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
(3alpha,5beta,7alpha,12alpha)-3,7,12-Trihydroxycholan-24-Oic acid;3alpha,7alpha,12alpha-Trihydroxy-5beta-cholanate;3alpha,7alpha,12alpha-Trihydroxy-5beta-cholanic acid;Cholsaeure;(3a,5b,7a,12a)-3,7,12-Trihydroxycholan-24-Oate;(3a,5b,7a,12a)-3,7,12-Trihydroxycholan-24-Oic acid;(3alpha,5beta,7alpha,12alpha)-3,7,12-Trihydroxycholan-24-Oate;(3Alpha,5beta,7Alpha,12Alpha)-3,7,12-trihydroxycholan-24-Oate;(3Alpha,5beta,7Alpha,12Alpha)-3,7,12-trihydroxycholan-24-Oic acid;Cholate;3a,7a,12a-Trihydroxy-5b-cholanate;3a,7a,12a-Trihydroxy-5b-cholanic acid;3Alpha,7Alpha,12Alpha-trihydroxy-5beta-cholanate;3Alpha,7Alpha,12Alpha-trihydroxy-5beta-cholanic acid;17b-[1-Methyl-3-carboxypropyl]etiocholane-3a,7a,12a-triol;3a,7a,12a-Trihydroxy-5b-cholan-24-Oate;3a,7a,12a-Trihydroxy-5b-cholan-24-Oic acid;3a,7a,12a-Trihydroxy-5b-cholanoate;3a,7a,12a-Trihydroxy-5b-cholanoic acid;3a,7a,12a-Trihydroxy-b-cholanate;3a,7a,12a-Trihydroxy-b-cholanic acid;3a,7a,12a-Trihydroxy-beta-cholanate;3a,7a,12a-Trihydroxy-beta-cholanic acid;3a,7a,12a-Trihydroxycholanate;3a,7a,12a-Trihydroxycholanic acid;5b-Cholanic acid-3a,7a,12a-triol;5b-Cholate;5b-Cholic acid;Cholalate;Cholalic acid;Cholalin;Colalin;Acid, cholic;
  Molecule Type
Bile acids (BAs)
  Formula
C24H39O5
  Inchi Key
BHQCQFFYRZLCQQ-OELDTZBJSA-M
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Human Metabolome Database (HMDB): Cholic acid is a major primary bile acid produced in the liver and is usually conjugated with glycine or taurine. It facilitates fat absorption and cholesterol excretion. Bile acids are steroid acids found predominantly in the bile of mammals. The distinction between different bile acids is minute, and depends only on the presence or absence of hydroxyl groups on positions 3, 7, and 12. Bile acids are physiological detergents that facilitate excretion, absorption, and transport of fats and sterols in the intestine and liver. Bile acids are also steroidal amphipathic molecules derived from the catabolism of cholesterol. They modulate bile flow and lipid secretion, are essential for the absorption of dietary fats and vitamins, and have been implicated in the regulation of all the key enzymes involved in cholesterol homeostasis. Bile acids recirculate through the liver, bile ducts, small intestine, and portal vein to form an enterohepatic circuit. They exist as anions at physiological pH, and consequently require a carrier for transport across the membranes of the enterohepatic tissues. The unique detergent properties of bile acids are essential for the digestion and intestinal absorption of hydrophobic nutrients. Bile acids have potent toxic properties (e.g. membrane disruption) and there are a plethora of mechanisms to limit their accumulation in blood and tissues (PMID: 11316487, 16037564, 12576301, 11907135). When present in sufficiently high levels, cholic acid can act as a hepatotoxin and a metabotoxin. A hepatotoxin causes damage to the liver or liver cells. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Among the primary bile acids, cholic acid is considered to be the least hepatotoxic while deoxycholic acid is the most hepatoxic (PMID: 1641875). The liver toxicity of bile acids appears to be due to their ability to peroxidate lipids and to lyse liver cells. Chronically high levels of cholic acid are associated with familial hypercholanemia. In hypercholanemia, bile acids, including cholic acid, are elevated in the blood. This disease causes liver damage, extensive itching, poor fat absorption, and can lead to rickets due to lack of calcium in bones. The deficiency of normal bile acids in the intestines results in a deficiency of vitamin K, which also adversely affects clotting of the blood. The bile acid ursodiol (ursodeoxycholic acid) can improve symptoms associated with familial hypercholanemia.
  External Links   HMDB ID   HMDB0000619
  VMH ID   cholate
  KEGG ID   C00695
  Metlin ID   206

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
Histone Deacetylation HDAC EM Info . . . [1], [2]

The microbes that produce this metabolite
      Eubacterium
         Detailed Information MIC Info click to show the detail information of this Microbiota [3], [4]
         Description
Eubacteria is a genus of gram-positive bacteria in the family Eubacteriaceae. These bacteria are characterised by a rigid cell wall. They may either be motile or nonmotile. If motile, they have a flagellum. A typical flagellum consists of a basal body, filament, and hook. The long filament is the organ which helps eubacteria move.
      Enterobacter
         Detailed Information MIC Info click to show the detail information of this Microbiota [1], [2]
         Description
Enterobacter is a genus of common gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae. It is the type genus of the order Enterobacterales.
      Escherichia
         Detailed Information MIC Info click to show the detail information of this Microbiota [1]
         Description
Escherichia is a genus of gram-negative, non-spore-forming, facultatively anaerobic, rod-shaped bacteria from the family Enterobacteriaceae.

References
1 Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host. Nutrients. 2020 Feb 25;12(3):597. doi: 10.3390/nu12030597.
2 Arachidonic and oleic acid exert distinct effects on the DNA methylome. Epigenetics. 2016 May 3;11(5):321-34. doi: 10.1080/15592294.2016.1161873. Epub 2016 Apr 18.
3 Dietary metabolites derived from gut microbiota: critical modulators of epigenetic changes in mammals. Nutr Rev. 2017 May 1;75(5):374-389. doi: 10.1093/nutrit/nux001.
4 Blood Pressure Abnormalities Associated with Gut Microbiota-Derived Short Chain Fatty Acids in Children with Congenital Anomalies of the Kidney and Urinary Tract J Clin Med. 2019 Jul 24;8(8):1090. doi: 10.3390/jcm8081090.

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