General Information of Metabolite (ID: MT019)
  Meta Name
Sperimidine
  Unify Name
Spermidine
  Synonym    Click to Show/Hide the Detailed Synonyms of This Metabolite
1,5,10-Triazadecane;4-Azaoctamethylenediamine;4-Azaoctane-1,8-diamine;N-(3-Aminopropyl)-1,4-butane-diamine;Spermidin;1,8-Diamino-4-azaoctane
  Molecule Type
Polyamines
  Formula
C7H22N3
  Inchi Key
ATHGHQPFGPMSJY-UHFFFAOYSA-N
  Description    Click to Show/Hide the Detailed Description of This Metabolite
Spermidine, also known as SPD, belongs to the class of organic compounds known as dialkylamines. These are organic compounds containing a dialkylamine group, characterized by two alkyl groups bonded to the amino nitrogen. Spermidine is a very strong basic compound (based on its pKa). Abnormal bleeding, such as bleeding spontaneously or profusely from a very minor injury can also occur. Spermidine exists in all living species, ranging from bacteria to humans. Within humans, spermidine participates in a number of enzymatic reactions. In particular, 5'-methylthioadenosine and spermidine can be biosynthesized from S-adenosylmethioninamine and putrescine; which is mediated by the enzyme spermidine synthase. In addition, S-adenosylmethioninamine and spermidine can be converted into 5'-methylthioadenosine and spermine through the action of the enzyme spermine synthase. In humans, spermidine is involved in spermidine and spermine biosynthesis. Outside of the human body, Spermidine is found, on average, in the highest concentration within milk (cow) and oats. Spermidine has also been detected, but not quantified in, several different foods, such as common chokecherries, watercress, agars, strawberry guava, and bog bilberries. This could make spermidine a potential biomarker for the consumption of these foods. KLOTHO has been identified as having important roles in anti-aging, mineral metabolism, and vitamin D metabolism. Shortness of breath from fluid buildup in the space between the lungs and the chest wall (pleural effusion) can also be present. Spermidine is a potentially toxic compound. Increased levels of uremic toxins can stimulate the production of reactive oxygen species. Chronic exposure to uremic toxins can lead to a number of conditions including renal damage, chronic kidney disease and cardiovascular disease. As a uremic toxin, this compound can cause uremic syndrome. Uremic toxins such as spermidine are actively transported into the kidneys via organic ion transporters (especially OAT3).
  External Links   HMDB ID   HMDB0001257
  VMH ID   SPMD
  KEGG ID   C00315
  Metlin ID   254

The epigenetic modification information of this metabolite
Modification Type Molecule EM Info Cell/Tissue Type Modified sites Condition REF
Histone Acetylation H3 EM Info PBMC cells lysine 18 . [1]
Histone Acetylation H3 EM Info PBMC cells lysine 14 . [2], [3]

The microbes that produce this metabolite
      Clostridium saccharolyticum
         Detailed Information MIC Info click to show the detail information of this Microbiota [2], [3]
         Description
Lacrimispora saccharolytica is an anaerobic, mesophilic bacteria.
      Campilobacter jejuni
         Detailed Information MIC Info click to show the detail information of this Microbiota [1]
         Description
Campylobacter jejuni is a common cause of human gastroenteritis. It is a gram-negative, curved, slender, motile rod and is found in food, feces, and water.

References
1 Gut Microbiota as Important Mediator Between Diet and DNA Methylation and Histone Modifications in the Host. Nutrients. 2020 Feb 25;12(3):597. doi: 10.3390/nu12030597.
2 Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells. 2010 Apr;28(4):713-20. doi: 10.1002/stem.402.
3 Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome PLoS One. 2020 Jan 24;15(1):e0228338. doi: 10.1371/journal.pone.0228338. eCollection 2020.

If You Find Any Error in Data or Bug in Web Service, Please Kindly Report It to Dr. Tang and Dr. Zhang.